Plate Nº 23 · recorded November 10, 2026
Biology & EvolutionReported finding
Genes' Grip on IQ Changes With Age, Study of 6,495 Kids Finds
A study of 6,495 British children found common genetic variants gained influence on IQ from age 4 to 16, while rare damaging mutations weakened — but heavy imputation limits confidence.
By James Calloway4 min read792 words
In brief
- Common genetic variants' share of IQ variation rose from 46% at age 4 to 56% at 16 (not statistically significant).
- Polygenic scores explained 11% of IQ variation at age 4, rising to 14% at 16.
- Gene-disabling mutations' negative IQ link was 3.2 times larger than protein-altering mutations and weakened with age.
- Roughly 9 in 10 age-4 IQ scores in the main analysis were statistical estimates, matched to real scores at a median correlation of 0.61.
- Rare variants explained 1.40% of age-4 IQ variation, versus 0.35% for premature birth and 0.18% for maternal pregnancy illness.

The share of IQ variation explained by common genetic variants rose from 46 percent at age 4 to 56 percent at 16 in a study tracking 6,495 British children — while the drag from rare, gene-disrupting mutations weakened over the same span. Published in Nature Human Behaviour, the research was led by Daniel S. Malawsky and Hilary C. Martin of the Wellcome Sanger Institute.
That two-way split is the headline. Common variants — tiny DNA differences carried by more than 1 percent of the population — became more strongly linked to IQ and school grades as children aged. Rare damaging mutations, which disrupt how a gene builds a protein, hit hardest in early childhood and faded by adolescence.
Why does this matter for parents carrying mutations?
The findings may explain a long-standing puzzle. Children with developmental disorders often inherit the causal mutation from a parent who seems perfectly fine — what geneticists call incomplete penetrance. If rare mutations impair cognition more at age 4 than at 16, an unaffected parent suddenly makes more sense.
How the study worked
The team analyzed three British cohorts: the Avon Longitudinal Study of Parents and Children, the Millennium Cohort Study, and UK Biobank. The core group — 6,495 unrelated children of European ancestry, born to Bristol mothers recruited in the early 1990s — took Wechsler IQ tests at ages 4, 8, and 16. Only 701 children had a measured age-4 score; 5,134 were tested at 8, and 3,774 at 16. Another 3,895 had school exam results at ages 11 and 14.
The researchers generated new exome sequencing data — reading the protein-coding 1 percent of DNA — for 16,103 children and 10,140 parents. Each child received three polygenic scores (aggregate measures of millions of small genetic effects) for educational attainment, its cognitive component, and its non-cognitive component, plus scores for rare variant burden.
What did they actually find?
- Polygenic scores explained about 11 percent of IQ variation at age 4, rising to 14 percent at 16.
- The overall common-variant share rose from 46 to 56 percent — but that increase was not statistically significant. Keep that caveat close.
- Gene-disabling mutations showed a negative association with IQ 3.2 times larger than protein-altering mutations. Harmless control mutations showed no link.
- Inherited rare variants explained 3.5 times more childhood IQ variation than new mutations; 12 percent of children carried an inherited variant versus 1.8 percent with a new one.
- The strengthening common-variant link concentrated in the upper half of the IQ distribution — above roughly IQ 125 — with no significant change at the bottom 5th percentile.
- At age 4, rare mutations' negative association was 3.9 times greater at the 5th percentile than the 95th; by 16, those differences vanished.
Even high-burden children mostly escaped severe impairment: among the top 5 percent of rare variant burden, about 7 percent had an IQ below 70 at age 8, versus roughly 3 percent of other children.
Rare variants explained 1.40 percent of IQ variation at age 4 — four to eight times more than premature birth (0.35 percent) or maternal pregnancy illness (0.18 percent). The child's educational polygenic score carried an association similar in size to the mother's or father's actual education level.
What are the weaknesses?
Plenty. And the authors admit most of them. Roughly 9 in 10 age-4 scores (5,794 of 6,495) were statistical estimates, not real tests; when researchers hid known scores and re-estimated them, the match was only moderate, with a median correlation of 0.61. Imputation also altered some age-4 percentile patterns. Children with lower polygenic scores completed fewer tests.
"Confidence in the results is somewhat limited by the analyses involving substantial imputation related to missing data, which in some cases altered the results, leaving me with some uncertainty about the interpretation," Liana Machado, a University of Otago psychologist uninvolved in the study, told PsyPost. "However, the thorough analysis approaches boosted my confidence in the reported results."
The sample was limited to Britons of European ancestry, so nothing here supports comparisons between ethnic groups. The scores describe population trends, not individual destinies. And because common- and rare-variant scores are built differently, strong conclusions about their opposite trajectories aren't warranted.
So what does this change for families?
Right now, nothing clinical. The authors suggest early delays in some mutation carriers might stem from treatable physical problems — congenital heart conditions, vision or hearing impairments — or from the developing brain compensating for a broken gene. Machado agreed access to healthcare is worth testing next, since confirmation "would highlight a pathway to better outcomes via targeted interventions." Larger whole-genome cohorts will need to settle it first.
via psypost.org (Source)
More from James Calloway
Show full bio
Staff writer covering regulation, policy and their impact on general science news at SciBeat.
346 articles
Nearby plates
- Toddler temperament linked to common DNA variations in study of 78,894 children
- Largest cognition genetics study raises rare-variant gene list to 26
- ADHD Linked to More Than Fourfold Higher Dementia Risk in Large Study
- New Immune Cell Atlas Links Genetic Variants to Disease Mechanisms
- Age-Based Cancer Genetic Testing Misses 72% of Inherited Variants